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Impact of SMSF Pension Rule Breaches
When an SMSF fails to comply with pension rules outlined in the Superannuation Industry (Supervision) Act (SIS Act) and Regulations, the consequences can be far-reaching. If a pension is deemed non-compliant, it is considered to have ceased from the start of the financial year in which the breach occurred.
This has two significant implications:
- Payments Reclassified: All payments made during the non-compliant year are treated as lump sums rather than income stream payments. This reclassification can have adverse tax implications for the SMSF member.
- Tax on Investment Income: Income earned from investments supporting the pension is taxed at 15% within the fund, as opposed to being tax-exempt under normal pension rules.
Moreover, reactivating the pension in a subsequent financial year resets the pension, treating it as a new pension for tax purposes. This reset can complicate estate planning. For example, the proportion of taxable and tax-free components in death benefits paid to adult children could change, potentially increasing their tax liability.
Minor Underpayments and ATO Discretion
The Australian Taxation Office (ATO) recognizes that minor breaches of SMSF pension rules can occur. In cases where the underpayment is minimal, the ATO may apply its General Powers of Administration (GPA) to disregard the breach, provided certain conditions are met.
- The underpayment must not exceed 1/12th of the minimum required pension payment for the financial year.
- Trustees must demonstrate that the breach was inadvertent and provide evidence of steps taken to rectify the error.
For instance, if Christine’s SMSF pension required a minimum payment of $42,500 in the 2021/22 financial year and she underpaid by no more than $3,542 (1/12th of the minimum), the ATO could exercise discretion and allow her fund to remain compliant.
It’s worth noting that the ATO’s discretion is not automatic, and trustees must apply for it by providing detailed documentation and justifications. This highlights the importance of meticulous record-keeping and prompt rectification of any discrepancies.

Transition to Retirement SMSF Pensions
Transition to retirement income streams (TRIS) come with stricter rules compared to other pension types. TRIS accounts allow members to draw down on their superannuation while still working, provided they have reached their preservation age.
If a TRIS breaches pension rules, the implications are severe:
- Payments from a failed TRIS are treated as early superannuation withdrawals and taxed at the member’s marginal tax rate, potentially resulting in significant tax liabilities.
- The pension must be fully commuted (formally ceased) before a new pension can be initiated. This requires a written request from the member to terminate the existing arrangement.
It’s crucial for SMSF trustees to ensure compliance with TRIS requirements, as the process of restarting a pension after a breach is both administratively complex and financially burdensome.
Interim Accounts and New SMSF Pension Start Dates
When an SMSF pension fails, interim accounts must be prepared to determine the current market value of the fund’s assets. This step is essential for setting a new pension’s start date, which cannot be backdated to a time before the breach was identified.
For example, if an underpayment is discovered in January 2025, the new pension start date can only be established from that point forward. This delay has immediate implications:
- The SMSF loses access to Exempt Current Pension Income (ECPI) for the period between the breach and the commencement of the new pension.
- Any earnings during this interim period are taxed at the standard 15% rate within the fund.
Delays in addressing underpayments not only reduce the fund’s tax efficiency but also complicate members’ financial planning, particularly if the fund is heavily reliant on pension income.
For more SMSF information, contact our SMSF Manager, Brad, or read more at the ATO.
Read out other relevant SMSF blogs:
How does SMSF differ from industry and retail super funds for long-term growth?
How do SMSF investment strategies work? What should I include in mine?
How to use limited recourse borrowing arrangements (LRBAs) in an SMSF





